The transcriptional landscape of polyploid wheat

R. H. Ramírez-González; Philippa Borrill; D. Lang; S. A. Harrington; J. Brinton; Luca Venturini; M. Davey; John Jacobs; F. van Ex; A. Pasha; Y. Khedikar; S. J. Robinson; A. T. Cory; T. Florio; Lorenzo Concia; C. Juery; H. Schoonbeek; Burkhard Steuernagel; Daoquan Xiang; C. J. Ridout; Boulos Chalhoub; Klaus F.X. Mayer; Moussa Benhamed; David Latrasse; A. Bendahmane; B. B. H. Wulff; Rudi Appels; Vijay Tiwari; R. Datla; Frédéric Choulet; C. J. Pozniak; N. J. Provart; Andrew G. Sharpe; Etienne Paux; Manuel Spannagl; A. Bräutigam; Cristobal Uauy; Abraham Korol; Andrew G. Sharpe; Angéla Juhász; Antje Rohde; Arnaud Bellec; Assaf Distelfeld; Bala Ani Akpinar; Beat Keller; Benoit Darrier; Bikram Gill; Boulos Chalhoub; Burkhard Steuernagel; Catherine Feuillet; Chanderkant Chaudhary; Cristobal Uauy; Curtis Pozniak; Danara Ormanbekova; Daoquan Xiang; David Latrasse; David Swarbreck; Delfina Barabaschi; Dina Raats; Ekaterina Sergeeva; Elena Salina; Etienne Paux; Federica Cattonaro; Frédéric Choulet; Fuminori Kobayashi; Gabriel Keeble-Gagnere; Gaganpreet Kaur; Gary Muehlbauer; George Kettleborough; Guotai Yu; Hana Šimková; Heidrun Gundlach; Hélène Berges; Hélène Rimbert; Hikmet Budak; Hirokazu Handa; Ian Small; Jan Bartoš; Jane Rogers; Jaroslav Doležel; Jens Keilwagen; Jesse Poland; Joanna Melonek; John Jacobs; Jon Wright; Jonathan D. G. Jones; Juan Gutierrez-Gonzalez; Kellye Eversole; Kirby Nilsen; Klaus F.X. Mayer; Kostya Kanyuka; Kuldeep Singh; Liangliang Gao; Lorenzo Concia; Luca Venturini; Luigi Cattivelli; Manuel Spannagl; Martin Mascher; Matthew Hayden; Michael Abrouk; Michael Alaux; Mingcheng Luo; Miroslav Valárik; Moussa Benhamed; Nagendra K. Singh; Naveen Sharma; Nicolas Guilhot; Nikolai Ravin; Nils Stein; Odd-Arne Olsen; Om Prakash Gupta; Paramjit Khurana; Parveen Chhuneja; Philipp E. Bayer; Philippa Borrill; Philippe Leroy; Philippe Rigault; Pierre Sourdille; Pilar Hernandez; Raphael Flores; Ricardo H. Ramirez-Gonzalez; Robert King; Ron Knox; Rudi Appels; Ruonan Zhou; Sean Walkowiak; Sergio Galvez; Sezgi Biyiklioglu; Shuhei Nasuda; Simen Sandve; Smahane Chalabi; Song Weining; Sunish Sehgal; Suruchi Jindal; Tatiana Belova; Thomas Letellier; Thomas Wicker; Tsuyoshi Tanaka; Tzion Fahima; Valérie Barbe; Vijay Tiwari; Vinod Kumar; Yifang Tan

doi:10.1126/science.aar6089

The transcriptional landscape of polyploid wheat

R. H. Ramírez-González, Philippa Borrill, D. Lang, S. A. Harrington, J. Brinton, Luca Venturini, M. Davey, John Jacobs, F. van Ex, A. Pasha, Y. Khedikar, S. J. Robinson, A. T. Cory, T. Florio, Lorenzo Concia, C. Juery, H. Schoonbeek, Burkhard Steuernagel, Daoquan Xiang, C. J. RidoutBoulos Chalhoub, Klaus F.X. Mayer, Moussa Benhamed, David Latrasse, A. Bendahmane, B. B. H. Wulff, Rudi Appels, Vijay Tiwari, R. Datla, Frédéric Choulet, C. J. Pozniak, N. J. Provart, Andrew G. Sharpe, Etienne Paux, Manuel Spannagl, A. Bräutigam, Cristobal Uauy, Abraham Korol, Andrew G. Sharpe, Angéla Juhász, Antje Rohde, Arnaud Bellec, Assaf Distelfeld, Bala Ani Akpinar, Beat Keller, Benoit Darrier, Bikram Gill, Boulos Chalhoub, Burkhard Steuernagel, Catherine Feuillet, Chanderkant Chaudhary, Cristobal Uauy, Curtis Pozniak, Danara Ormanbekova, Daoquan Xiang, David Latrasse, David Swarbreck, Delfina Barabaschi, Dina Raats, Ekaterina Sergeeva, Elena Salina, Etienne Paux, Federica Cattonaro, Frédéric Choulet, Fuminori Kobayashi, Gabriel Keeble-Gagnere, Gaganpreet Kaur, Gary Muehlbauer, George Kettleborough, Guotai Yu, Hana Šimková, Heidrun Gundlach, Hélène Berges, Hélène Rimbert, Hikmet Budak, Hirokazu Handa, Ian Small, Jan Bartoš, Jane Rogers, Jaroslav Doležel, Jens Keilwagen, Jesse Poland, Joanna Melonek, John Jacobs, Jon Wright, Jonathan D. G. Jones, Juan Gutierrez-Gonzalez, Kellye Eversole, Kirby Nilsen, Klaus F.X. Mayer, Kostya Kanyuka, Kuldeep Singh, Liangliang Gao, Lorenzo Concia, Luca Venturini, Luigi Cattivelli, Manuel Spannagl, Martin Mascher, Matthew Hayden, Michael Abrouk, Michael Alaux, Mingcheng Luo, Miroslav Valárik, Moussa Benhamed, Nagendra K. Singh, Naveen Sharma, Nicolas Guilhot, Nikolai Ravin, Nils Stein, Odd-Arne Olsen, Om Prakash Gupta, Paramjit Khurana, Parveen Chhuneja, Philipp E. Bayer, Philippa Borrill, Philippe Leroy, Philippe Rigault, Pierre Sourdille, Pilar Hernandez, Raphael Flores, Ricardo H. Ramirez-Gonzalez, Robert King, Ron Knox, Rudi Appels, Ruonan Zhou, Sean Walkowiak, Sergio Galvez, Sezgi Biyiklioglu, Shuhei Nasuda, Simen Sandve, Smahane Chalabi, Song Weining, Sunish Sehgal, Suruchi Jindal, Tatiana Belova, Thomas Letellier, Thomas Wicker, Tsuyoshi Tanaka, Tzion Fahima, Valérie Barbe, Vijay Tiwari, Vinod Kumar, Yifang Tan

Department of Evolutionary and Environmental Biology

Research output: Contribution to journal › Article › peer-review

Abstract

Insights from the annotated wheat genome
Wheat is one of the major sources of food for much of the world. However, because bread wheat's genome is a large hybrid mix of three separate subgenomes, it has been difficult to produce a high-quality reference sequence. Using recent advances in sequencing, the International Wheat Genome Sequencing Consortium presents an annotated reference genome with a detailed analysis of gene content among subgenomes and the structural organization for all the chromosomes. Examples of quantitative trait mapping and CRISPR-based genome modification show the potential for using this genome in agricultural research and breeding. Ramírez-González et al. exploited the fruits of this endeavor to identify tissue-specific biased gene expression and coexpression networks during development and exposure to stress. These resources will accelerate our understanding of the genetic basis of bread wheat.

Original language	English
Article number	eaar6089
Journal	Science
Volume	361
Issue number	6403
DOIs	https://doi.org/10.1126/science.aar6089
State	Published - 2018

Bibliographical note

Publisher Copyright:
© 2017 by the Authors.

ASJC Scopus subject areas

General

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10.1126/science.aar6089

Cite this

Ramírez-González, R. H., Borrill, P., Lang, D., Harrington, S. A., Brinton, J., Venturini, L., Davey, M., Jacobs, J., van Ex, F., Pasha, A., Khedikar, Y., Robinson, S. J., Cory, A. T., Florio, T., Concia, L., Juery, C., Schoonbeek, H., Steuernagel, B., Xiang, D., ... Tan, Y. (2018). The transcriptional landscape of polyploid wheat. Science, 361(6403), Article eaar6089. https://doi.org/10.1126/science.aar6089

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title = "The transcriptional landscape of polyploid wheat",

abstract = "Insights from the annotated wheat genomeWheat is one of the major sources of food for much of the world. However, because bread wheat's genome is a large hybrid mix of three separate subgenomes, it has been difficult to produce a high-quality reference sequence. Using recent advances in sequencing, the International Wheat Genome Sequencing Consortium presents an annotated reference genome with a detailed analysis of gene content among subgenomes and the structural organization for all the chromosomes. Examples of quantitative trait mapping and CRISPR-based genome modification show the potential for using this genome in agricultural research and breeding. Ram{\'i}rez-Gonz{\'a}lez et al. exploited the fruits of this endeavor to identify tissue-specific biased gene expression and coexpression networks during development and exposure to stress. These resources will accelerate our understanding of the genetic basis of bread wheat.",

author = "Ram{\'i}rez-Gonz{\'a}lez, {R. H.} and Philippa Borrill and D. Lang and Harrington, {S. A.} and J. Brinton and Luca Venturini and M. Davey and John Jacobs and {van Ex}, F. and A. Pasha and Y. Khedikar and Robinson, {S. J.} and Cory, {A. T.} and T. Florio and Lorenzo Concia and C. Juery and H. Schoonbeek and Burkhard Steuernagel and Daoquan Xiang and Ridout, {C. J.} and Boulos Chalhoub and Mayer, {Klaus F.X.} and Moussa Benhamed and David Latrasse and A. Bendahmane and Wulff, {B. B. H.} and Rudi Appels and Vijay Tiwari and R. Datla and Fr{\'e}d{\'e}ric Choulet and Pozniak, {C. J.} and Provart, {N. J.} and Sharpe, {Andrew G.} and Etienne Paux and Manuel Spannagl and A. Br{\"a}utigam and Cristobal Uauy and Abraham Korol and Sharpe, {Andrew G.} and Ang{\'e}la Juh{\'a}sz and Antje Rohde and Arnaud Bellec and Assaf Distelfeld and Akpinar, {Bala Ani} and Beat Keller and Benoit Darrier and Bikram Gill and Boulos Chalhoub and Burkhard Steuernagel and Catherine Feuillet and Chanderkant Chaudhary and Cristobal Uauy and Curtis Pozniak and Danara Ormanbekova and Daoquan Xiang and David Latrasse and David Swarbreck and Delfina Barabaschi and Dina Raats and Ekaterina Sergeeva and Elena Salina and Etienne Paux and Federica Cattonaro and Fr{\'e}d{\'e}ric Choulet and Fuminori Kobayashi and Gabriel Keeble-Gagnere and Gaganpreet Kaur and Gary Muehlbauer and George Kettleborough and Guotai Yu and Hana {\v S}imkov{\'a} and Heidrun Gundlach and H{\'e}l{\`e}ne Berges and H{\'e}l{\`e}ne Rimbert and Hikmet Budak and Hirokazu Handa and Ian Small and Jan Barto{\v s} and Jane Rogers and Jaroslav Dole{\v z}el and Jens Keilwagen and Jesse Poland and Joanna Melonek and John Jacobs and Jon Wright and Jones, {Jonathan D. G.} and Juan Gutierrez-Gonzalez and Kellye Eversole and Kirby Nilsen and Mayer, {Klaus F.X.} and Kostya Kanyuka and Kuldeep Singh and Liangliang Gao and Lorenzo Concia and Luca Venturini and Luigi Cattivelli and Manuel Spannagl and Martin Mascher and Matthew Hayden and Michael Abrouk and Michael Alaux and Mingcheng Luo and Miroslav Val{\'a}rik and Moussa Benhamed and Singh, {Nagendra K.} and Naveen Sharma and Nicolas Guilhot and Nikolai Ravin and Nils Stein and Odd-Arne Olsen and Gupta, {Om Prakash} and Paramjit Khurana and Parveen Chhuneja and Bayer, {Philipp E.} and Philippa Borrill and Philippe Leroy and Philippe Rigault and Pierre Sourdille and Pilar Hernandez and Raphael Flores and Ramirez-Gonzalez, {Ricardo H.} and Robert King and Ron Knox and Rudi Appels and Ruonan Zhou and Sean Walkowiak and Sergio Galvez and Sezgi Biyiklioglu and Shuhei Nasuda and Simen Sandve and Smahane Chalabi and Song Weining and Sunish Sehgal and Suruchi Jindal and Tatiana Belova and Thomas Letellier and Thomas Wicker and Tsuyoshi Tanaka and Tzion Fahima and Val{\'e}rie Barbe and Vijay Tiwari and Vinod Kumar and Yifang Tan",

note = "Publisher Copyright: {\textcopyright} 2017 by the Authors.",

year = "2018",

doi = "10.1126/science.aar6089",

language = "אנגלית",

volume = "361",

journal = "Science",

issn = "0036-8075",

publisher = "American Association for the Advancement of Science",

number = "6403",

}

Ramírez-González, RH, Borrill, P, Lang, D, Harrington, SA, Brinton, J, Venturini, L, Davey, M, Jacobs, J, van Ex, F, Pasha, A, Khedikar, Y, Robinson, SJ, Cory, AT, Florio, T, Concia, L, Juery, C, Schoonbeek, H, Steuernagel, B, Xiang, D, Ridout, CJ, Chalhoub, B, Mayer, KFX, Benhamed, M, Latrasse, D, Bendahmane, A, Wulff, BBH, Appels, R, Tiwari, V, Datla, R, Choulet, F, Pozniak, CJ, Provart, NJ, Sharpe, AG, Paux, E, Spannagl, M, Bräutigam, A, Uauy, C, Korol, A, Sharpe, AG, Juhász, A, Rohde, A, Bellec, A, Distelfeld, A, Akpinar, BA, Keller, B, Darrier, B, Gill, B, Chalhoub, B, Steuernagel, B, Feuillet, C, Chaudhary, C, Uauy, C, Pozniak, C, Ormanbekova, D, Xiang, D, Latrasse, D, Swarbreck, D, Barabaschi, D, Raats, D, Sergeeva, E, Salina, E, Paux, E, Cattonaro, F, Choulet, F, Kobayashi, F, Keeble-Gagnere, G, Kaur, G, Muehlbauer, G, Kettleborough, G, Yu, G, Šimková, H, Gundlach, H, Berges, H, Rimbert, H, Budak, H, Handa, H, Small, I, Bartoš, J, Rogers, J, Doležel, J, Keilwagen, J, Poland, J, Melonek, J, Jacobs, J, Wright, J, Jones, JDG, Gutierrez-Gonzalez, J, Eversole, K, Nilsen, K, Mayer, KFX, Kanyuka, K, Singh, K, Gao, L, Concia, L, Venturini, L, Cattivelli, L, Spannagl, M, Mascher, M, Hayden, M, Abrouk, M, Alaux, M, Luo, M, Valárik, M, Benhamed, M, Singh, NK, Sharma, N, Guilhot, N, Ravin, N, Stein, N, Olsen, O-A, Gupta, OP, Khurana, P, Chhuneja, P, Bayer, PE, Borrill, P, Leroy, P, Rigault, P, Sourdille, P, Hernandez, P, Flores, R, Ramirez-Gonzalez, RH, King, R, Knox, R, Appels, R, Zhou, R, Walkowiak, S, Galvez, S, Biyiklioglu, S, Nasuda, S, Sandve, S, Chalabi, S, Weining, S, Sehgal, S, Jindal, S, Belova, T, Letellier, T, Wicker, T, Tanaka, T, Fahima, T, Barbe, V, Tiwari, V, Kumar, V & Tan, Y 2018, 'The transcriptional landscape of polyploid wheat', Science, vol. 361, no. 6403, eaar6089. https://doi.org/10.1126/science.aar6089

TY - JOUR

T1 - The transcriptional landscape of polyploid wheat

AU - Ramírez-González, R. H.

AU - Borrill, Philippa

AU - Lang, D.

AU - Harrington, S. A.

AU - Brinton, J.

AU - Venturini, Luca

AU - Davey, M.

AU - Jacobs, John

AU - van Ex, F.

AU - Pasha, A.

AU - Khedikar, Y.

AU - Robinson, S. J.

AU - Cory, A. T.

AU - Florio, T.

AU - Concia, Lorenzo

AU - Juery, C.

AU - Schoonbeek, H.

AU - Steuernagel, Burkhard

AU - Xiang, Daoquan

AU - Ridout, C. J.

AU - Chalhoub, Boulos

AU - Mayer, Klaus F.X.

AU - Benhamed, Moussa

AU - Latrasse, David

AU - Bendahmane, A.

AU - Wulff, B. B. H.

AU - Appels, Rudi

AU - Tiwari, Vijay

AU - Datla, R.

AU - Choulet, Frédéric

AU - Pozniak, C. J.

AU - Provart, N. J.

AU - Sharpe, Andrew G.

AU - Paux, Etienne

AU - Spannagl, Manuel

AU - Bräutigam, A.

AU - Uauy, Cristobal

AU - Korol, Abraham

AU - Sharpe, Andrew G.

AU - Juhász, Angéla

AU - Rohde, Antje

AU - Bellec, Arnaud

AU - Distelfeld, Assaf

AU - Akpinar, Bala Ani

AU - Keller, Beat

AU - Darrier, Benoit

AU - Gill, Bikram

AU - Chalhoub, Boulos

AU - Steuernagel, Burkhard

AU - Feuillet, Catherine

AU - Chaudhary, Chanderkant

AU - Uauy, Cristobal

AU - Pozniak, Curtis

AU - Ormanbekova, Danara

AU - Xiang, Daoquan

AU - Latrasse, David

AU - Swarbreck, David

AU - Barabaschi, Delfina

AU - Raats, Dina

AU - Sergeeva, Ekaterina

AU - Salina, Elena

AU - Paux, Etienne

AU - Cattonaro, Federica

AU - Choulet, Frédéric

AU - Kobayashi, Fuminori

AU - Keeble-Gagnere, Gabriel

AU - Kaur, Gaganpreet

AU - Muehlbauer, Gary

AU - Kettleborough, George

AU - Yu, Guotai

AU - Šimková, Hana

AU - Gundlach, Heidrun

AU - Berges, Hélène

AU - Rimbert, Hélène

AU - Budak, Hikmet

AU - Handa, Hirokazu

AU - Small, Ian

AU - Bartoš, Jan

AU - Rogers, Jane

AU - Doležel, Jaroslav

AU - Keilwagen, Jens

AU - Poland, Jesse

AU - Melonek, Joanna

AU - Jacobs, John

AU - Wright, Jon

AU - Jones, Jonathan D. G.

AU - Gutierrez-Gonzalez, Juan

AU - Eversole, Kellye

AU - Nilsen, Kirby

AU - Mayer, Klaus F.X.

AU - Kanyuka, Kostya

AU - Singh, Kuldeep

AU - Gao, Liangliang

AU - Concia, Lorenzo

AU - Venturini, Luca

AU - Cattivelli, Luigi

AU - Spannagl, Manuel

AU - Mascher, Martin

AU - Hayden, Matthew

AU - Abrouk, Michael

AU - Alaux, Michael

AU - Luo, Mingcheng

AU - Valárik, Miroslav

AU - Benhamed, Moussa

AU - Singh, Nagendra K.

AU - Sharma, Naveen

AU - Guilhot, Nicolas

AU - Ravin, Nikolai

AU - Stein, Nils

AU - Olsen, Odd-Arne

AU - Gupta, Om Prakash

AU - Khurana, Paramjit

AU - Chhuneja, Parveen

AU - Bayer, Philipp E.

AU - Borrill, Philippa

AU - Leroy, Philippe

AU - Rigault, Philippe

AU - Sourdille, Pierre

AU - Hernandez, Pilar

AU - Flores, Raphael

AU - Ramirez-Gonzalez, Ricardo H.

AU - King, Robert

AU - Knox, Ron

AU - Appels, Rudi

AU - Zhou, Ruonan

AU - Walkowiak, Sean

AU - Galvez, Sergio

AU - Biyiklioglu, Sezgi

AU - Nasuda, Shuhei

AU - Sandve, Simen

AU - Chalabi, Smahane

AU - Weining, Song

AU - Sehgal, Sunish

AU - Jindal, Suruchi

AU - Belova, Tatiana

AU - Letellier, Thomas

AU - Wicker, Thomas

AU - Tanaka, Tsuyoshi

AU - Fahima, Tzion

AU - Barbe, Valérie

AU - Tiwari, Vijay

AU - Kumar, Vinod

AU - Tan, Yifang

PY - 2018

Y1 - 2018

N2 - Insights from the annotated wheat genomeWheat is one of the major sources of food for much of the world. However, because bread wheat's genome is a large hybrid mix of three separate subgenomes, it has been difficult to produce a high-quality reference sequence. Using recent advances in sequencing, the International Wheat Genome Sequencing Consortium presents an annotated reference genome with a detailed analysis of gene content among subgenomes and the structural organization for all the chromosomes. Examples of quantitative trait mapping and CRISPR-based genome modification show the potential for using this genome in agricultural research and breeding. Ramírez-González et al. exploited the fruits of this endeavor to identify tissue-specific biased gene expression and coexpression networks during development and exposure to stress. These resources will accelerate our understanding of the genetic basis of bread wheat.

AB - Insights from the annotated wheat genomeWheat is one of the major sources of food for much of the world. However, because bread wheat's genome is a large hybrid mix of three separate subgenomes, it has been difficult to produce a high-quality reference sequence. Using recent advances in sequencing, the International Wheat Genome Sequencing Consortium presents an annotated reference genome with a detailed analysis of gene content among subgenomes and the structural organization for all the chromosomes. Examples of quantitative trait mapping and CRISPR-based genome modification show the potential for using this genome in agricultural research and breeding. Ramírez-González et al. exploited the fruits of this endeavor to identify tissue-specific biased gene expression and coexpression networks during development and exposure to stress. These resources will accelerate our understanding of the genetic basis of bread wheat.

UR - http://www.scopus.com/inward/record.url?scp=85051729135&partnerID=8YFLogxK

U2 - 10.1126/science.aar6089

DO - 10.1126/science.aar6089

M3 - מאמר

C2 - 30115782

SN - 0036-8075

VL - 361

JO - Science

JF - Science

IS - 6403

M1 - eaar6089

ER -

The transcriptional landscape of polyploid wheat

Abstract

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