Structural and functional analysis of the representatives of a new class of retroelements in Drosophila species

Various copies of mobile element Penelope previously described in Drosophila virilis have been investigated in different strains of D. virilis and transgenic strains of D. melanogaster transformed by P-based constructs containing full-size copy of Penelope. It has been demonstrated that most of Penelope copies in both species carry large terminal inverted repeats (TIR) and contain deletions of various size at their 5'end of ORF. Junctions between TIR and ORF usually carry microhomology of various length enabling to postulate a hypothesis explaining the molecular mechanism underlying the origin of such complex structures. Penelope copies usually carry 34 bp repeat located in direct orientation at both end of ORF and target site duplications of various length.