Solar radiation-associated adaptive SNP genetic differentiation in wild emmer wheat, Triticum dicoccoides

Jing Ren, Liang Chen, Xiaoli Jin, Miaomiao Zhang, Frank M. You, Jirui Wang, Vladimir Frenkel, Xuegui Yin, Eviatar Nevo, Dongfa Sun, Ming Cheng Luo, Junhua Peng

Research output: Contribution to journalArticlepeer-review

Abstract

Whole-genome scans with large number of genetic markers provide the opportunity to investigate local adaptation in natural populations and identify candidate genes under positive selection. In the present study, adaptation genetic differentiation associated with solar radiation was investigated using 695 polymorphic SNP markers in wild emmer wheat originated in a micro-site at Yehudiyya, Israel. The test involved two solar radiation niches: (1) sun, in-between trees; and (2) shade, under tree canopy, separated apart by a distance of 2-4 m. Analysis of molecular variance showed a small (0.53%) but significant portion of overall variation between the sun and shade micro-niches, indicating a non-ignorable genetic differentiation between sun and shade habitats. Fifty SNP markers showed a medium (0.05 ≤ FST ≤ 0.15) or high genetic differentiation (FST > 0.15). A total of 21 outlier loci under positive selection were identified by using four different FST -outlier testing algorithms. The markers and genome locations under positive selection are consistent with the known patterns of selection. These results suggested that genetic differentiation between sun and shade habitats is substantial, radiation-associated, and therefore ecologically determined. Hence, the results of this study reflected effects of natural selection through solar radiation on EST-related SNP genetic diversity, resulting presumably in different adaptive complexes at a micro-scale divergence. The present work highlights the evolutionary theory and application significance of solar radiation-driven natural selection in wheat improvement.

Original languageEnglish
Article number258
JournalFrontiers in Plant Science
Volume8
DOIs
StatePublished - 14 Mar 2017

Bibliographical note

Funding Information:
This work was supported by the China National Science Foundation (NSFC) Grant No. 31030055, 30870233 (to JP) and 31672482, the Natural Science Foundation of Hubei Province, China Grant No. ZRY1326, and the Taishan Scholars Program of Shandong Province in China.

Publisher Copyright:
© 2017 Ren, Chen, Jin, Zhang, You, Wang, Frenkel, Yin, Nevo, Sun, Luo and Peng.

Keywords

  • Genetic differentiation
  • Natural selection
  • SNP marker
  • Solar radiation
  • Wild emmer wheat

ASJC Scopus subject areas

  • Plant Science

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