Population-genetic analysis of HvABCG31 promoter sequence in wild barley (Hordeum vulgare ssp. spontaneum)

Xiaoying Ma, Hanan Sela, Genlin Jiao, Chao Li, Aidong Wang, Mohammad Pourkheirandish, Dmitry Weiner, Shun Sakuma, Tamar Krugman, Eviatar Nevo, Takao Komatsuda, Abraham Korol, Guoxiong Chen

Research output: Contribution to journalArticlepeer-review


Background: The cuticle is an important adaptive structure whose origin played a crucial role in the transition of plants from aqueous to terrestrial conditions. HvABCG31/Eibi1 is an ABCG transporter gene, involved in cuticle formation that was recently identified in wild barley (Hordeum vulgare ssp. spontaneum). To study the genetic variation of HvABCG31 in different habitats, its 2 kb promoter region was sequenced from 112 wild barley accessions collected from five natural populations from southern and northern Israel. The sites included three mesic and two xeric habitats, and differed in annual rainfall, soil type, and soil water capacity. Results: Phylogenetic analysis of the aligned HvABCG31 promoter sequences clustered the majority of accessions (69 out of 71) from the three northern mesic populations into one cluster, while all 21 accessions from the Dead Sea area, a xeric southern population, and two isolated accessions (one from a xeric population at Mitzpe Ramon and one from the xeric 'African Slope' of "Evolution Canyon") formed the second cluster. The southern arid populations included six haplotypes, but they differed from the consensus sequence at a large number of positions, while the northern mesic populations included 15 haplotypes that were, on average, more similar to the consensus sequence. Most of the haplotypes (20 of 22) were unique to a population. Interestingly, higher genetic variation occurred within populations (54.2%) than among populations (45.8%). Analysis of the promoter region detected a large number of transcription factor binding sites: 121-128 and 121-134 sites in the two southern arid populations, and 123-128,125-128, and 123-125 sites in the three northern mesic populations. Three types of TFBSs were significantly enriched: those related to GA (gibberellin), Dof (DNA binding with one finger), and light. Conclusions: Drought stress and adaptive natural selection may have been important determinants in the observed sequence variation of HvABCG31 promoter. Abiotic stresses may be involved in the HvABCG31 gene transcription regulations, generating more protective cuticles in plants under stresses.

Original languageEnglish
Article number188
JournalBMC Evolutionary Biology
Issue number1
StatePublished - 2012

Bibliographical note

Funding Information:
We thank Frédéric Choulet for kindly providing the wheat 3B HvABCG31 promoter sequence, and Avigdor Beiles for constructive discussions. This work was supported by Grant O827751002 and 29Y127E71 from “One Hundred Talents” Project of The Chinese Academy of Sciences, grants 30970449 and 31170369 from the National Natural Science Foundation of China, and grant from the Ancell Tericher Research Foundation of Genetics and Molecular Evolution.


  • HvABCG31
  • Phylogenetic
  • Promoter
  • TFBSs
  • Wild barley

ASJC Scopus subject areas

  • Ecology, Evolution, Behavior and Systematics


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