Longest common extensions in trees

Philip Bille, Paweł Gawrychowski, Inge Li Gørtz, Gad M. Landau, Oren Weimann

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

The longest common extension (LCE) of two indices in a string is the length of the longest identical substrings starting at these two indices. The LCE problem asks to preprocess a string into a compact data structure that supports fast LCE queries. In this paper we generalize the LCE problem to trees and suggest a few applications of LCE in trees to tries and XML databases. Given a labeled and rooted tree T of size n, the goal is to preprocess T into a compact data structure that support the following LCE queries between subpaths and subtrees in T. Let v1, v2, w1, and w2 be nodes of T such that w1 and w2 are descendants of v1 and v2 respectively. - LCEPP(v1, w1, v2, w2): (path-path LCE) return the longest common prefix of the paths v1 ⇝ w1 and v2 ⇝ w2. - LCEPT (v1, w1, v2): (path-tree LCE) return maximal path-path LCE of the path v1 ⇝ w1 and any path from v2 to a descendant leaf. - LCETT (v1, v2): (tree-tree LCE) return a maximal path-path LCE of any pair of paths from v1 and v2 to descendant leaves. We present the first non-trivial bounds for supporting these queries. For LCEPP queries, we present a linear-space solution with O(log n) query time. For LCEPT queries, we present a linear-space solution with O((log log n)2) query time, and complement this with a lower bound showing that any path-tree LCE structure of size O(n polylog(n)) must necessarily use Ω(log log n) time to answer queries. For LCETT queries, we present a time-space trade-off, that given any parameter τ, 1 ≤ τ ≤ n, leads to an O(nτ) space and O(n/τ) query-time solution. This is complemented with a reduction to the set intersection problem implying that a fast linear space solution is not likely to exist.

Original languageEnglish
Title of host publicationCombinatorial Pattern Matching - 26th Annual Symposium, CPM 2015, Proceedings
EditorsUgo Vaccaro, Ely Porat, Ferdinando Cicalese
PublisherSpringer Verlag
Pages52-64
Number of pages13
ISBN (Print)9783319199283
DOIs
StatePublished - 2015
Event26th Annual Symposium on Combinatorial Pattern Matching, CPM 2015 - Ischia Island, Italy
Duration: 29 Jun 20151 Jul 2015

Publication series

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume9133
ISSN (Print)0302-9743
ISSN (Electronic)1611-3349

Conference

Conference26th Annual Symposium on Combinatorial Pattern Matching, CPM 2015
Country/TerritoryItaly
CityIschia Island
Period29/06/151/07/15

Bibliographical note

Publisher Copyright:
© Springer International Publishing Switzerland 2015.

ASJC Scopus subject areas

  • Theoretical Computer Science
  • General Computer Science

Fingerprint

Dive into the research topics of 'Longest common extensions in trees'. Together they form a unique fingerprint.

Cite this