Abstract
The longest common extension (LCE) of two indices in a string is the length of the longest identical substrings starting at these two indices. The LCE problem asks to preprocess a string into a compact data structure that supports fast LCE queries. In this paper we generalize the LCE problem to trees and suggest a few applications of LCE in trees to tries and XML databases. Given a labeled and rooted tree T of size n, the goal is to preprocess T into a compact data structure that support the following LCE queries between subpaths and subtrees in T. Let v1, v2, w1, and w2 be nodes of T such that w1 and w2 are descendants of v1 and v2 respectively. - LCEPP(v1, w1, v2, w2): (path-path LCE) return the longest common prefix of the paths v1 ⇝ w1 and v2 ⇝ w2. - LCEPT (v1, w1, v2): (path-tree LCE) return maximal path-path LCE of the path v1 ⇝ w1 and any path from v2 to a descendant leaf. - LCETT (v1, v2): (tree-tree LCE) return a maximal path-path LCE of any pair of paths from v1 and v2 to descendant leaves. We present the first non-trivial bounds for supporting these queries. For LCEPP queries, we present a linear-space solution with O(log∗ n) query time. For LCEPT queries, we present a linear-space solution with O((log log n)2) query time, and complement this with a lower bound showing that any path-tree LCE structure of size O(n polylog(n)) must necessarily use Ω(log log n) time to answer queries. For LCETT queries, we present a time-space trade-off, that given any parameter τ, 1 ≤ τ ≤ n, leads to an O(nτ) space and O(n/τ) query-time solution. This is complemented with a reduction to the set intersection problem implying that a fast linear space solution is not likely to exist.
Original language | English |
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Title of host publication | Combinatorial Pattern Matching - 26th Annual Symposium, CPM 2015, Proceedings |
Editors | Ugo Vaccaro, Ely Porat, Ferdinando Cicalese |
Publisher | Springer Verlag |
Pages | 52-64 |
Number of pages | 13 |
ISBN (Print) | 9783319199283 |
DOIs | |
State | Published - 2015 |
Event | 26th Annual Symposium on Combinatorial Pattern Matching, CPM 2015 - Ischia Island, Italy Duration: 29 Jun 2015 → 1 Jul 2015 |
Publication series
Name | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) |
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Volume | 9133 |
ISSN (Print) | 0302-9743 |
ISSN (Electronic) | 1611-3349 |
Conference
Conference | 26th Annual Symposium on Combinatorial Pattern Matching, CPM 2015 |
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Country/Territory | Italy |
City | Ischia Island |
Period | 29/06/15 → 1/07/15 |
Bibliographical note
Publisher Copyright:© Springer International Publishing Switzerland 2015.
ASJC Scopus subject areas
- Theoretical Computer Science
- General Computer Science