In situ analysis of coral recruits using fluorescence imaging

Research output: Contribution to journalArticlepeer-review


Recruitment is a fundamental process that influences coral population dynamics as well as reef community structure. To date, coral recruitment success rates are poorly quantified because surveymethods are labor-intensive and requiremanual interpretation. Thus, they are prone to human errors and have low repeatability-a gap we aim to bridge in this research. Since both corals and their symbiotic algae contain fluorescent pigments (chlorophyll and fluorescent proteins), we used the non-invasive Fluorescence Imaging System (FluorIS) and developed a methodology to acquire daytime fluorescent photographs and identify coral recruits in them. We tested our method by monitoring 20 random quadrats at two sites in the Gulf of Aqaba, Israel. The quadrats were surveyed once a month for 8 months in order to track the settlement, mortality and survival rates of new coral recruits. We demonstrate daytime imaging using our method and identification of coral recruits as small as 1mm in diameter, in a 20 × 20 cm quadrat. Our results show that this photographic method reduces surveyor errors and improves precision. The surveys revealed that on average, there are ~2 new coral recruit settlements (<2 cm) for a quadrat (40 cm2) per month and that 83% of them survive the first month. Our study suggests a relative stability in the Gulf of Aqaba coral population during the survey period. The ability to survey recruits during the day using low-cost, easy-to-use photographic equipment has the potential to contribute significantly to the standardization of coral reef monitoring and management tools, at a time when the world's coral reefs are declining due to local and global stressors.

Original languageEnglish
Article number273
JournalFrontiers in Marine Science
Issue numberSEP
StatePublished - 5 Sep 2017

Bibliographical note

Publisher Copyright:
© 2017 Zweifler, Akkaynak, Mass and Treibitz.


  • Ecological monitoring
  • Recruitment
  • Survey
  • Survival
  • Underwater imaging

ASJC Scopus subject areas

  • Oceanography
  • Global and Planetary Change
  • Aquatic Science
  • Water Science and Technology
  • Environmental Science (miscellaneous)
  • Ocean Engineering


Dive into the research topics of 'In situ analysis of coral recruits using fluorescence imaging'. Together they form a unique fingerprint.

Cite this