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Improving micromorphological analysis with CNN-based segmentation of flint/obsidian, bone and charcoal

  • Rafael Arnay
  • , Pedro García-Villa
  • , Javier Hernández-Aceituno
  • , Sara Rueda-Saiz
  • , Carolina Mallol

Research output: Contribution to journal › Article › peer-review

Abstract

The quantification and identification of components in archaeological micromorphology remain subjective and challenging, particularly for early-career researchers. To address this, we developed a deep learning tool for the automatic segmentation of three materials commonly found in Palaeolithic contexts and thin sections: bone, charcoal, and lithic fine-grained debitage (flint and obsidian). Using high-resolution photomicrographs of 57 thin sections in plane-polarised and cross-polarised light, we trained and evaluated state-of-the-art convolutional neural networks (CNNs) for material segmentation. The best-performing configuration, a U-Net with an InceptionV4 encoder, achieved mean intersection over union (IoU) scores of 0.96 for flint/obsidian, 0.80 for bone, and 0.82 for charcoal. The models also classified the relative abundance of each material with balanced accuracies of 0.99 for flint/obsidian, 0.92 for bone, and 0.85 for charcoal. These results demonstrate the potential of deep learning to enhance objectivity, accuracy, and reproducibility in archaeological micromorphology, providing a valuable resource for future geoarchaeological research.

Original languageEnglish
Article numbere0340353
JournalPLOS ONE
Volume21
Issue number1 January
DOIs
StatePublished - Jan 2026
Externally publishedYes

Bibliographical note

Publisher Copyright:
© 2026 Arnay et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

ASJC Scopus subject areas

  • General

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