High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods

Yana Aizenberg-Gershtein; Ido Izhaki; Alla Lapidus; Alex Copeland; T. B.K. Reddy; Marcel Huntemann; Manoj Pillay; Victor Markowitz; Markus Göker; Tanja Woyke; Hans Peter Klenk; Nikos C. Kyrpides; Malka Halpern

doi:10.1186/s40793-015-0127-5

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775^T, a plant pathogen of French bean pods

Yana Aizenberg-Gershtein, Ido Izhaki, Alla Lapidus, Alex Copeland, T. B.K. Reddy, Marcel Huntemann, Manoj Pillay, Victor Markowitz, Markus Göker, Tanja Woyke, Hans Peter Klenk, Nikos C. Kyrpides, Malka Halpern

Research output: Contribution to journal › Article › peer-review

Abstract

Phaseolibacter flectens strain ATCC 12775^T (Halpern et al., Int J Syst Evol Microbiol 63:268-273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.

Original language	English
Article number	4
Journal	Standards in Genomic Sciences
Volume	11
Issue number	1
DOIs	https://doi.org/10.1186/s40793-015-0127-5
State	Published - 13 Jan 2016

Bibliographical note

Funding Information:
This project has been supported by the Community Sequencing Program of the U.S. Department of Energy’s Joint Genome Institute. The sequencing, assembly and automated genome analysis work at the DOE-JGI was supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. AL was supported in part by St. Petersburg State University grant (No 1.38.253.2015). This work was also supported in part by a grant from the Israel Science Foundation (ISF, grant no. 1094/12) (Prof. Ido Izhaki and Prof. Malka Halpern, PIs) and in part by a grant from the German Research Foundation (DFG, the Deutsche Forschungsgemeinschaft, GZ: HO 930/5-1) (Prof. Malka Halpern).

Publisher Copyright:
© 2016 Aizenberg-Gershtein et al.

Keywords

Enterobacteriaceae
French bean pod
Phaseolibacter flectens
Phaseolus vulgaris
Plant pathogen

ASJC Scopus subject areas

Genetics

Access to Document

10.1186/s40793-015-0127-5

Cite this

Aizenberg-Gershtein, Y., Izhaki, I., Lapidus, A., Copeland, A., Reddy, T. B. K., Huntemann, M., Pillay, M., Markowitz, V., Göker, M., Woyke, T., Klenk, H. P., Kyrpides, N. C., & Halpern, M. (2016). High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775^T, a plant pathogen of French bean pods. Standards in Genomic Sciences, 11(1), [4]. https://doi.org/10.1186/s40793-015-0127-5

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title = "High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods",

abstract = "Phaseolibacter flectens strain ATCC 12775T (Halpern et al., Int J Syst Evol Microbiol 63:268-273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.",

keywords = "Enterobacteriaceae, French bean pod, Phaseolibacter flectens, Phaseolus vulgaris, Plant pathogen",

author = "Yana Aizenberg-Gershtein and Ido Izhaki and Alla Lapidus and Alex Copeland and Reddy, {T. B.K.} and Marcel Huntemann and Manoj Pillay and Victor Markowitz and Markus G{\"o}ker and Tanja Woyke and Klenk, {Hans Peter} and Kyrpides, {Nikos C.} and Malka Halpern",

note = "Funding Information: This project has been supported by the Community Sequencing Program of the U.S. Department of Energy{\textquoteright}s Joint Genome Institute. The sequencing, assembly and automated genome analysis work at the DOE-JGI was supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. AL was supported in part by St. Petersburg State University grant (No 1.38.253.2015). This work was also supported in part by a grant from the Israel Science Foundation (ISF, grant no. 1094/12) (Prof. Ido Izhaki and Prof. Malka Halpern, PIs) and in part by a grant from the German Research Foundation (DFG, the Deutsche Forschungsgemeinschaft, GZ: HO 930/5-1) (Prof. Malka Halpern). Publisher Copyright: {\textcopyright} 2016 Aizenberg-Gershtein et al.",

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Aizenberg-Gershtein, Y, Izhaki, I, Lapidus, A, Copeland, A, Reddy, TBK, Huntemann, M, Pillay, M, Markowitz, V, Göker, M, Woyke, T, Klenk, HP, Kyrpides, NC & Halpern, M 2016, 'High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775^T, a plant pathogen of French bean pods', Standards in Genomic Sciences, vol. 11, no. 1, 4. https://doi.org/10.1186/s40793-015-0127-5

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AU - Aizenberg-Gershtein, Yana

AU - Izhaki, Ido

AU - Lapidus, Alla

AU - Copeland, Alex

AU - Reddy, T. B.K.

AU - Huntemann, Marcel

AU - Pillay, Manoj

AU - Markowitz, Victor

AU - Göker, Markus

AU - Woyke, Tanja

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

AU - Halpern, Malka

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N2 - Phaseolibacter flectens strain ATCC 12775T (Halpern et al., Int J Syst Evol Microbiol 63:268-273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.

AB - Phaseolibacter flectens strain ATCC 12775T (Halpern et al., Int J Syst Evol Microbiol 63:268-273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. flectens is as a plant-pathogenic bacterium on pods of French bean and was first identified by Johnson (1956) as Pseudomonas flectens. After its phylogenetic position was reexamined, Pseudomonas flectens was transferred to the family Enterobacteriaceae as Phaseolibacter flectens gen. nov., comb. nov. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA GC content is 44.34 mol%. The chromosome length is 2,748,442 bp. It encodes 2,437 proteins and 89 RNA genes. Ph. flectens genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.

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