High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk

Sivan Laviad-Shitrit; Markus Göker; Marcel Huntemann; Alicia Clum; Manoj Pillay; Krishnaveni Palaniappan; Neha Varghese; Natalia Mikhailova; Dimitrios Stamatis; T. B.K. Reddy; Chris Daum; Nicole Shapiro; Victor Markowitz; Natalia Ivanova; Tanja Woyke; Hans Peter Klenk; Nikos C. Kyrpides; Malka Halpern

doi:10.1186/s40793-017-0242-6

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482^T, isolated from raw cow milk

Sivan Laviad-Shitrit, Markus Göker, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B.K. Reddy, Chris Daum, Nicole Shapiro, Victor Markowitz, Natalia Ivanova, Tanja Woyke, Hans Peter Klenk, Nikos C. Kyrpides, Malka Halpern

Department of Evolutionary and Environmental Biology

Research output: Contribution to journal › Article › peer-review

Abstract

Chryseobacterium bovis DSM 19482^T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotroph bacterium. C. bovis is a member of the Flavobacteriaceae, a family within the phylum Bacteroidetes. It was isolated when psychrotolerant bacterial communities in raw milk and their proteolytic and lipolytic traits were studied. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA G + C content is 38.19%. The chromosome length is 3,346,045 bp. It encodes 3236 proteins and 105 RNA genes. The C. bovis genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.

Original language	English
Article number	31
Journal	Standards in Genomic Sciences
Volume	12
Issue number	1
DOIs	https://doi.org/10.1186/s40793-017-0242-6
State	Published - 8 May 2017

Bibliographical note

Funding Information:
This project has been supported by the Community Sequencing Program of the U.S. Department of Energy’s Joint Genome Institute. The sequencing, assembly and automated genome analysis work at the DOE-JGI was supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported in part by a grant from the German Research Foundation (DFG, the Deutsche Forschungsgemeinschaft, GZ: HO 930/5-1 and 930/5-2.; Prof. Malka Halpern). We are grateful to Andrea Schütze for growing cells and to Meike Döppner for preparing gDNA (both at DSMZ).

Publisher Copyright:
© 2017 The Author(s).

Keywords

Beta-carotene
Flavobacteriaceae
Lipolysis
Proteolysis
Psychrotolerant

ASJC Scopus subject areas

Genetics

Access to Document

10.1186/s40793-017-0242-6

Cite this

Laviad-Shitrit, S., Göker, M., Huntemann, M., Clum, A., Pillay, M., Palaniappan, K., Varghese, N., Mikhailova, N., Stamatis, D., Reddy, T. B. K., Daum, C., Shapiro, N., Markowitz, V., Ivanova, N., Woyke, T., Klenk, H. P., Kyrpides, N. C., & Halpern, M. (2017). High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482^T, isolated from raw cow milk. Standards in Genomic Sciences, 12(1), Article 31. https://doi.org/10.1186/s40793-017-0242-6

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title = "High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk",

abstract = "Chryseobacterium bovis DSM 19482T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotroph bacterium. C. bovis is a member of the Flavobacteriaceae, a family within the phylum Bacteroidetes. It was isolated when psychrotolerant bacterial communities in raw milk and their proteolytic and lipolytic traits were studied. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA G + C content is 38.19%. The chromosome length is 3,346,045 bp. It encodes 3236 proteins and 105 RNA genes. The C. bovis genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.",

keywords = "Beta-carotene, Flavobacteriaceae, Lipolysis, Proteolysis, Psychrotolerant",

author = "Sivan Laviad-Shitrit and Markus G{\"o}ker and Marcel Huntemann and Alicia Clum and Manoj Pillay and Krishnaveni Palaniappan and Neha Varghese and Natalia Mikhailova and Dimitrios Stamatis and Reddy, {T. B.K.} and Chris Daum and Nicole Shapiro and Victor Markowitz and Natalia Ivanova and Tanja Woyke and Klenk, {Hans Peter} and Kyrpides, {Nikos C.} and Malka Halpern",

note = "Funding Information: This project has been supported by the Community Sequencing Program of the U.S. Department of Energy{\textquoteright}s Joint Genome Institute. The sequencing, assembly and automated genome analysis work at the DOE-JGI was supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported in part by a grant from the German Research Foundation (DFG, the Deutsche Forschungsgemeinschaft, GZ: HO 930/5-1 and 930/5-2.; Prof. Malka Halpern). We are grateful to Andrea Sch{\"u}tze for growing cells and to Meike D{\"o}ppner for preparing gDNA (both at DSMZ). Publisher Copyright: {\textcopyright} 2017 The Author(s).",

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Laviad-Shitrit, S, Göker, M, Huntemann, M, Clum, A, Pillay, M, Palaniappan, K, Varghese, N, Mikhailova, N, Stamatis, D, Reddy, TBK, Daum, C, Shapiro, N, Markowitz, V, Ivanova, N, Woyke, T, Klenk, HP, Kyrpides, NC & Halpern, M 2017, 'High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482^T, isolated from raw cow milk', Standards in Genomic Sciences, vol. 12, no. 1, 31. https://doi.org/10.1186/s40793-017-0242-6

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AU - Laviad-Shitrit, Sivan

AU - Göker, Markus

AU - Huntemann, Marcel

AU - Clum, Alicia

AU - Pillay, Manoj

AU - Palaniappan, Krishnaveni

AU - Varghese, Neha

AU - Mikhailova, Natalia

AU - Stamatis, Dimitrios

AU - Reddy, T. B.K.

AU - Daum, Chris

AU - Shapiro, Nicole

AU - Markowitz, Victor

AU - Ivanova, Natalia

AU - Woyke, Tanja

AU - Klenk, Hans Peter

AU - Kyrpides, Nikos C.

AU - Halpern, Malka

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N2 - Chryseobacterium bovis DSM 19482T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotroph bacterium. C. bovis is a member of the Flavobacteriaceae, a family within the phylum Bacteroidetes. It was isolated when psychrotolerant bacterial communities in raw milk and their proteolytic and lipolytic traits were studied. Here we describe the features of this organism, together with the draft genome sequence and annotation. The DNA G + C content is 38.19%. The chromosome length is 3,346,045 bp. It encodes 3236 proteins and 105 RNA genes. The C. bovis genome is part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes study.

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