Genome-wide signatures of the geographic expansion and breeding of soybean

Ying Hui Li; Chao Qin; Li Wang; Chengzhi Jiao; Huilong Hong; Yu Tian; Yanfei Li; Guangnan Xing; Jun Wang; Yongzhe Gu; Xingpeng Gao; Delin Li; Hongyu Li; Zhangxiong Liu; Xin Jing; Beibei Feng; Tao Zhao; Rongxia Guan; Yong Guo; Jun Liu; Zhe Yan; Lijuan Zhang; Tianli Ge; Xiangkong Li; Xiaobo Wang; Hongmei Qiu; Wanhai Zhang; Xiaoyan Luan; Yingpeng Han; Dezhi Han; Ruzhen Chang; Yalong Guo; Jochen C. Reif; Scott A. Jackson; Bin Liu; Shilin Tian; Li juan Qiu

doi:10.1007/s11427-022-2158-7

Genome-wide signatures of the geographic expansion and breeding of soybean

Ying Hui Li, Chao Qin, Li Wang, Chengzhi Jiao, Huilong Hong, Yu Tian, Yanfei Li, Guangnan Xing, Jun Wang, Yongzhe Gu, Xingpeng Gao, Delin Li, Hongyu Li, Zhangxiong Liu, Xin Jing, Beibei Feng, Tao Zhao, Rongxia Guan, Yong Guo, Jun LiuZhe Yan, Lijuan Zhang, Tianli Ge, Xiangkong Li, Xiaobo Wang, Hongmei Qiu, Wanhai Zhang, Xiaoyan Luan, Yingpeng Han, Dezhi Han, Ruzhen Chang, Yalong Guo, Jochen C. Reif, Scott A. Jackson, Bin Liu, Shilin Tian, Li juan Qiu

Research output: Contribution to journal › Article › peer-review

Abstract

Soybean is a leguminous crop that provides oil and protein. Exploring the genomic signatures of soybean evolution is crucial for breeding varieties with improved adaptability to environmental extremes. We analyzed the genome sequences of 2,214 soybeans and proposed a soybean evolutionary route, i.e., the expansion of annual wild soybean (Glycine soja Sieb. & Zucc.) from southern China and its domestication in central China, followed by the expansion and local breeding selection of its landraces (G. max (L.) Merr.). We observed that the genetic introgression in soybean landraces was mostly derived from sympatric rather than allopatric wild populations during the geographic expansion. Soybean expansion and breeding were accompanied by the positive selection of flowering time genes, including GmSPA3c. Our study sheds light on the evolutionary history of soybean and provides valuable genetic resources for its future breeding.

Original language	English
Pages (from-to)	350-365
Number of pages	16
Journal	Science China Life Sciences
Volume	66
Issue number	2
DOIs	https://doi.org/10.1007/s11427-022-2158-7
State	Published - Feb 2023
Externally published	Yes

Bibliographical note

Publisher Copyright:
© 2022, Science China Press and Springer-Verlag GmbH Germany, part of Springer Nature.

Keywords

adaptation
breeding
flowering time
introgression
soybean

ASJC Scopus subject areas

General Biochemistry, Genetics and Molecular Biology
General Environmental Science
General Agricultural and Biological Sciences

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1007/s11427-022-2158-7

Cite this

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title = "Genome-wide signatures of the geographic expansion and breeding of soybean",

abstract = "Soybean is a leguminous crop that provides oil and protein. Exploring the genomic signatures of soybean evolution is crucial for breeding varieties with improved adaptability to environmental extremes. We analyzed the genome sequences of 2,214 soybeans and proposed a soybean evolutionary route, i.e., the expansion of annual wild soybean (Glycine soja Sieb. & Zucc.) from southern China and its domestication in central China, followed by the expansion and local breeding selection of its landraces (G. max (L.) Merr.). We observed that the genetic introgression in soybean landraces was mostly derived from sympatric rather than allopatric wild populations during the geographic expansion. Soybean expansion and breeding were accompanied by the positive selection of flowering time genes, including GmSPA3c. Our study sheds light on the evolutionary history of soybean and provides valuable genetic resources for its future breeding.",

keywords = "adaptation, breeding, flowering time, introgression, soybean",

author = "Li, {Ying Hui} and Chao Qin and Li Wang and Chengzhi Jiao and Huilong Hong and Yu Tian and Yanfei Li and Guangnan Xing and Jun Wang and Yongzhe Gu and Xingpeng Gao and Delin Li and Hongyu Li and Zhangxiong Liu and Xin Jing and Beibei Feng and Tao Zhao and Rongxia Guan and Yong Guo and Jun Liu and Zhe Yan and Lijuan Zhang and Tianli Ge and Xiangkong Li and Xiaobo Wang and Hongmei Qiu and Wanhai Zhang and Xiaoyan Luan and Yingpeng Han and Dezhi Han and Ruzhen Chang and Yalong Guo and Reif, {Jochen C.} and Jackson, {Scott A.} and Bin Liu and Shilin Tian and Qiu, {Li juan}",

note = "Publisher Copyright: {\textcopyright} 2022, Science China Press and Springer-Verlag GmbH Germany, part of Springer Nature.",

year = "2023",

month = feb,

doi = "10.1007/s11427-022-2158-7",

language = "English",

volume = "66",

pages = "350--365",

journal = "Science China Life Sciences",

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Li, YH, Qin, C, Wang, L, Jiao, C, Hong, H, Tian, Y, Li, Y, Xing, G, Wang, J, Gu, Y, Gao, X, Li, D, Li, H, Liu, Z, Jing, X, Feng, B, Zhao, T, Guan, R, Guo, Y, Liu, J, Yan, Z, Zhang, L, Ge, T, Li, X, Wang, X, Qiu, H, Zhang, W, Luan, X, Han, Y, Han, D, Chang, R, Guo, Y, Reif, JC, Jackson, SA, Liu, B, Tian, S & Qiu, LJ 2023, 'Genome-wide signatures of the geographic expansion and breeding of soybean', Science China Life Sciences, vol. 66, no. 2, pp. 350-365. https://doi.org/10.1007/s11427-022-2158-7

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AU - Li, Ying Hui

AU - Qin, Chao

AU - Wang, Li

AU - Jiao, Chengzhi

AU - Hong, Huilong

AU - Tian, Yu

AU - Li, Yanfei

AU - Xing, Guangnan

AU - Wang, Jun

AU - Gu, Yongzhe

AU - Gao, Xingpeng

AU - Li, Delin

AU - Li, Hongyu

AU - Liu, Zhangxiong

AU - Jing, Xin

AU - Feng, Beibei

AU - Zhao, Tao

AU - Guan, Rongxia

AU - Guo, Yong

AU - Liu, Jun

AU - Yan, Zhe

AU - Zhang, Lijuan

AU - Ge, Tianli

AU - Li, Xiangkong

AU - Wang, Xiaobo

AU - Qiu, Hongmei

AU - Zhang, Wanhai

AU - Luan, Xiaoyan

AU - Han, Yingpeng

AU - Han, Dezhi

AU - Chang, Ruzhen

AU - Guo, Yalong

AU - Reif, Jochen C.

AU - Jackson, Scott A.

AU - Liu, Bin

AU - Tian, Shilin

AU - Qiu, Li juan

PY - 2023/2

Y1 - 2023/2

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AB - Soybean is a leguminous crop that provides oil and protein. Exploring the genomic signatures of soybean evolution is crucial for breeding varieties with improved adaptability to environmental extremes. We analyzed the genome sequences of 2,214 soybeans and proposed a soybean evolutionary route, i.e., the expansion of annual wild soybean (Glycine soja Sieb. & Zucc.) from southern China and its domestication in central China, followed by the expansion and local breeding selection of its landraces (G. max (L.) Merr.). We observed that the genetic introgression in soybean landraces was mostly derived from sympatric rather than allopatric wild populations during the geographic expansion. Soybean expansion and breeding were accompanied by the positive selection of flowering time genes, including GmSPA3c. Our study sheds light on the evolutionary history of soybean and provides valuable genetic resources for its future breeding.

KW - adaptation

KW - breeding

KW - flowering time

KW - introgression

KW - soybean

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SN - 1674-7305

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JF - Science China Life Sciences

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ER -

Genome-wide signatures of the geographic expansion and breeding of soybean

Abstract

Bibliographical note

Keywords

ASJC Scopus subject areas

UN SDGs

Access to Document

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