Construction of the full local similarity map for two biopolymers

A. M. Leontovich; L. I. Brodsky; A. E. Gorbalenya

doi:10.1016/0303-2647(93)90062-H

Construction of the full local similarity map for two biopolymers

A. M. Leontovich, L. I. Brodsky, A. E. Gorbalenya

Research output: Contribution to journal › Article › peer-review

Abstract

A novel algorithm for construction of complete maps of local similarity for two biopolymer sequences is described. The algorithm is much faster than the related Altschul-Erickson procedure. it is implemented as the Dot-Helix module within the GeneBee package. Performance of the algorithm is exemplified with the analysis of the polyproteins of two poliovirus type 3 strains and its effectivity is compared to the Staden method. Possible applications of the algorithm are briefly discussed.

Original language	English
Pages (from-to)	57-63
Number of pages	7
Journal	BioSystems
Volume	30
Issue number	1-3
DOIs	https://doi.org/10.1016/0303-2647(93)90062-H
State	Published - 1993
Externally published	Yes

ASJC Scopus subject areas

Statistics and Probability
Modeling and Simulation
General Biochemistry, Genetics and Molecular Biology
Applied Mathematics

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10.1016/0303-2647(93)90062-H

Cite this

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title = "Construction of the full local similarity map for two biopolymers",

abstract = "A novel algorithm for construction of complete maps of local similarity for two biopolymer sequences is described. The algorithm is much faster than the related Altschul-Erickson procedure. it is implemented as the Dot-Helix module within the GeneBee package. Performance of the algorithm is exemplified with the analysis of the polyproteins of two poliovirus type 3 strains and its effectivity is compared to the Staden method. Possible applications of the algorithm are briefly discussed.",

author = "Leontovich, {A. M.} and Brodsky, {L. I.} and Gorbalenya, {A. E.}",

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AU - Leontovich, A. M.

AU - Brodsky, L. I.

AU - Gorbalenya, A. E.

PY - 1993

Y1 - 1993

N2 - A novel algorithm for construction of complete maps of local similarity for two biopolymer sequences is described. The algorithm is much faster than the related Altschul-Erickson procedure. it is implemented as the Dot-Helix module within the GeneBee package. Performance of the algorithm is exemplified with the analysis of the polyproteins of two poliovirus type 3 strains and its effectivity is compared to the Staden method. Possible applications of the algorithm are briefly discussed.

AB - A novel algorithm for construction of complete maps of local similarity for two biopolymer sequences is described. The algorithm is much faster than the related Altschul-Erickson procedure. it is implemented as the Dot-Helix module within the GeneBee package. Performance of the algorithm is exemplified with the analysis of the polyproteins of two poliovirus type 3 strains and its effectivity is compared to the Staden method. Possible applications of the algorithm are briefly discussed.

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U2 - 10.1016/0303-2647(93)90062-H

DO - 10.1016/0303-2647(93)90062-H

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SP - 57

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JO - BioSystems

JF - BioSystems

IS - 1-3

ER -

Construction of the full local similarity map for two biopolymers

Abstract

ASJC Scopus subject areas

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