Comparative genomics explains the evolutionary success of reef-forming corals

Debashish Bhattacharya; Shobhit Agrawal; Manuel Aranda; Sebastian Baumgarten; Mahdi Belcaid; Jeana L. Drake; Douglas Erwin; Sylvian Foret; Ruth D. Gates; David F. Gruber; Bishoy Kamel; Michael P. Lesser; Oren Levy; Yi Jin Liew; Matthew MacManes; Tali Mass; Monica Medina; Shaadi Mehr; Eli Meyer; Dana C. Price; Hollie M. Putnam; Huan Qiu; Chuya Shinzato; Eiichi Shoguchi; Alexander J. Stokes; Sylvie Tambutté; Dan Tchernov; Christian R. Voolstra; Nicole Wagner; Charles W. Walker; Andreas P.M. Weber; Virginia Weis; Ehud Zelzion; Didier Zoccola; Paul G. Falkowski

doi:10.7554/eLife.13288

Comparative genomics explains the evolutionary success of reef-forming corals

Debashish Bhattacharya, Shobhit Agrawal, Manuel Aranda, Sebastian Baumgarten, Mahdi Belcaid, Jeana L. Drake, Douglas Erwin, Sylvian Foret, Ruth D. Gates, David F. Gruber, Bishoy Kamel, Michael P. Lesser, Oren Levy, Yi Jin Liew, Matthew MacManes, Tali Mass, Monica Medina, Shaadi Mehr, Eli Meyer, Dana C. PriceHollie M. Putnam, Huan Qiu, Chuya Shinzato, Eiichi Shoguchi, Alexander J. Stokes, Sylvie Tambutté, Dan Tchernov, Christian R. Voolstra, Nicole Wagner, Charles W. Walker, Andreas P.M. Weber, Virginia Weis, Ehud Zelzion, Didier Zoccola, Paul G. Falkowski

Department of Marine Biology

Research output: Contribution to journal › Article › peer-review

Abstract

Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental sensors that coordinate responses of the host animals to temperature, light, and pH. Furthermore, we describe a variety of stress-related pathways, including apoptotic pathways that allow the host animals to detoxify reactive oxygen and nitrogen species that are generated by their intracellular photosynthetic symbionts, and determine the fate of corals under environmental stress. Some of these genes arose through horizontal gene transfer and comprise at least 0.2% of the animal gene inventory. Our analysis elucidates the evolutionary strategies that have allowed symbiotic corals to adapt and thrive for hundreds of millions of years.

Original language	English
Article number	e13288
Journal	eLife
Volume	5
Issue number	MAY2016
DOIs	https://doi.org/10.7554/eLife.13288
State	Published - 24 May 2016

Bibliographical note

Publisher Copyright:
© Bhattacharya et al.

ASJC Scopus subject areas

General Neuroscience
General Biochemistry, Genetics and Molecular Biology
General Immunology and Microbiology

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10.7554/eLife.13288

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Bhattacharya, D., Agrawal, S., Aranda, M., Baumgarten, S., Belcaid, M., Drake, J. L., Erwin, D., Foret, S., Gates, R. D., Gruber, D. F., Kamel, B., Lesser, M. P., Levy, O., Liew, Y. J., MacManes, M., Mass, T., Medina, M., Mehr, S., Meyer, E., ... Falkowski, P. G. (2016). Comparative genomics explains the evolutionary success of reef-forming corals. eLife, 5(MAY2016), Article e13288. https://doi.org/10.7554/eLife.13288

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title = "Comparative genomics explains the evolutionary success of reef-forming corals",

abstract = "Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental sensors that coordinate responses of the host animals to temperature, light, and pH. Furthermore, we describe a variety of stress-related pathways, including apoptotic pathways that allow the host animals to detoxify reactive oxygen and nitrogen species that are generated by their intracellular photosynthetic symbionts, and determine the fate of corals under environmental stress. Some of these genes arose through horizontal gene transfer and comprise at least 0.2% of the animal gene inventory. Our analysis elucidates the evolutionary strategies that have allowed symbiotic corals to adapt and thrive for hundreds of millions of years.",

author = "Debashish Bhattacharya and Shobhit Agrawal and Manuel Aranda and Sebastian Baumgarten and Mahdi Belcaid and Drake, {Jeana L.} and Douglas Erwin and Sylvian Foret and Gates, {Ruth D.} and Gruber, {David F.} and Bishoy Kamel and Lesser, {Michael P.} and Oren Levy and Liew, {Yi Jin} and Matthew MacManes and Tali Mass and Monica Medina and Shaadi Mehr and Eli Meyer and Price, {Dana C.} and Putnam, {Hollie M.} and Huan Qiu and Chuya Shinzato and Eiichi Shoguchi and Stokes, {Alexander J.} and Sylvie Tambutt{\'e} and Dan Tchernov and Voolstra, {Christian R.} and Nicole Wagner and Walker, {Charles W.} and Weber, {Andreas P.M.} and Virginia Weis and Ehud Zelzion and Didier Zoccola and Falkowski, {Paul G.}",

note = "Publisher Copyright: {\textcopyright} Bhattacharya et al.",

year = "2016",

month = may,

day = "24",

doi = "10.7554/eLife.13288",

language = "English",

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Bhattacharya, D, Agrawal, S, Aranda, M, Baumgarten, S, Belcaid, M, Drake, JL, Erwin, D, Foret, S, Gates, RD, Gruber, DF, Kamel, B, Lesser, MP, Levy, O, Liew, YJ, MacManes, M, Mass, T, Medina, M, Mehr, S, Meyer, E, Price, DC, Putnam, HM, Qiu, H, Shinzato, C, Shoguchi, E, Stokes, AJ, Tambutté, S, Tchernov, D, Voolstra, CR, Wagner, N, Walker, CW, Weber, APM, Weis, V, Zelzion, E, Zoccola, D & Falkowski, PG 2016, 'Comparative genomics explains the evolutionary success of reef-forming corals', eLife, vol. 5, no. MAY2016, e13288. https://doi.org/10.7554/eLife.13288

TY - JOUR

T1 - Comparative genomics explains the evolutionary success of reef-forming corals

AU - Bhattacharya, Debashish

AU - Agrawal, Shobhit

AU - Aranda, Manuel

AU - Baumgarten, Sebastian

AU - Belcaid, Mahdi

AU - Drake, Jeana L.

AU - Erwin, Douglas

AU - Foret, Sylvian

AU - Gates, Ruth D.

AU - Gruber, David F.

AU - Kamel, Bishoy

AU - Lesser, Michael P.

AU - Levy, Oren

AU - Liew, Yi Jin

AU - MacManes, Matthew

AU - Mass, Tali

AU - Medina, Monica

AU - Mehr, Shaadi

AU - Meyer, Eli

AU - Price, Dana C.

AU - Putnam, Hollie M.

AU - Qiu, Huan

AU - Shinzato, Chuya

AU - Shoguchi, Eiichi

AU - Stokes, Alexander J.

AU - Tambutté, Sylvie

AU - Tchernov, Dan

AU - Voolstra, Christian R.

AU - Wagner, Nicole

AU - Walker, Charles W.

AU - Weber, Andreas P.M.

AU - Weis, Virginia

AU - Zelzion, Ehud

AU - Zoccola, Didier

AU - Falkowski, Paul G.

PY - 2016/5/24

Y1 - 2016/5/24

N2 - Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental sensors that coordinate responses of the host animals to temperature, light, and pH. Furthermore, we describe a variety of stress-related pathways, including apoptotic pathways that allow the host animals to detoxify reactive oxygen and nitrogen species that are generated by their intracellular photosynthetic symbionts, and determine the fate of corals under environmental stress. Some of these genes arose through horizontal gene transfer and comprise at least 0.2% of the animal gene inventory. Our analysis elucidates the evolutionary strategies that have allowed symbiotic corals to adapt and thrive for hundreds of millions of years.

AB - Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental sensors that coordinate responses of the host animals to temperature, light, and pH. Furthermore, we describe a variety of stress-related pathways, including apoptotic pathways that allow the host animals to detoxify reactive oxygen and nitrogen species that are generated by their intracellular photosynthetic symbionts, and determine the fate of corals under environmental stress. Some of these genes arose through horizontal gene transfer and comprise at least 0.2% of the animal gene inventory. Our analysis elucidates the evolutionary strategies that have allowed symbiotic corals to adapt and thrive for hundreds of millions of years.

UR - http://www.scopus.com/inward/record.url?scp=84971659903&partnerID=8YFLogxK

U2 - 10.7554/eLife.13288

DO - 10.7554/eLife.13288

M3 - Article

C2 - 27218454

AN - SCOPUS:84971659903

SN - 2050-084X

VL - 5

JO - eLife

JF - eLife

IS - MAY2016

M1 - e13288

ER -

Comparative genomics explains the evolutionary success of reef-forming corals

Abstract

Bibliographical note

ASJC Scopus subject areas

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