Sagi Snir

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Sagi Snir

 https://orcid.org/0000-0001-5833-7659
    20002024

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    • 2024

      Gene-Adjacency-Based Phylogenetics Under a Stochastic Gain-Loss Model

      Dvir, Y., Brezner, S. & Snir, S., 2024, Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Proceedings. Scornavacca, C. & Hernández-Rosales, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 69-85 17 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14616 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • On the Distribution of Synteny Blocks Under a Neutral Model of Genome Dynamics

      Snir, S., Wolf, Y., Brezner, S., Koonin, E. & Steel, M., 2024, Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Proceedings. Scornavacca, C. & Hernández-Rosales, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 173-188 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14616 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Privacy Preserving Epigenetic PaceMaker: Stronger Privacy and Improved Efficiency

      Goldenberg, M., Mualem, L., Shahar, A., Snir, S. & Akavia, A., 2024, Research in Computational Molecular Biology - 28th Annual International Conference, RECOMB 2024, Proceedings. Ma, J. (ed.). Springer Science and Business Media Deutschland GmbH, p. 412-416 5 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14758 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2023

      Inferring Temporally Consistent Migration Histories

      Roddur, M. S., Snir, S. & El-Kebir, M., Aug 2023, 23rd International Workshop on Algorithms in Bioinformatics, WABI 2023. Belazzougui, D. & Ouangraoua, A. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 9. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 273).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Using Generating Functions to Prove Additivity of Gene-Neighborhood Based Phylogenetics - Extended Abstract

      Katriel, G., Mahanaymi, U., Koutschan, C., Zeilberger, D., Steel, M. & Snir, S., 2023, Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Proceedings. Guo, X., Mangul, S., Patterson, M. & Zelikovsky, A. (eds.). Springer Science and Business Media Deutschland GmbH, p. 120-135 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14248 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2022

      Private Epigenetic PaceMaker Detector Using Homomorphic Encryption - Extended Abstract

      Goldenberg, M., Snir, S. & Akavia, A., 2022, Bioinformatics Research and Applications - 18th International Symposium, ISBRA 2022, Proceedings. Bansal, M. S., Cai, Z. & Mangul, S. (eds.). Springer Science and Business Media Deutschland GmbH, p. 52-61 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13760 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2019

      Epigenetic PaceMaker: Closed Form Algebraic Solutions

      Snir, S., 2019, RECOMB - Comparative Genomics 2019.

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Greedy Partition Distance Under Stochastic Models - Analytic Results

      Snir, S., 2019, Bioinformatics Research and Applications - 15th International Symposium, ISBRA 2019, Proceedings. Li, M., Cai, Z. & Skums, P. (eds.). Springer Verlag, p. 257-269 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11490 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2018

      Bounds on identification of genome evolution pacemakers

      Snir, S., 2018, Bioinformatics Research and Applications - 14th International Symposium, ISBRA 2018, Proceedings. Zhang, F., Zhang, S., Cai, Z. & Skums, P. (eds.). Springer Verlag, p. 51-62 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10847 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Detecting Horizontal Gene Transfer: A Probabilistic Approach

      Sevillya, G., Adato, O. & Snir, S., 2018, ISBRA 2018. (Lecture Notes in Bioinformatics; vol. 10847).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Extending the evolvability model to the prokaryotic world: Simulations and results on real data

      Snir, S. & Yohay, B., 2018, Bioinformatics Research and Applications - 14th International Symposium, ISBRA 2018, Proceedings. Zhang, F., Zhang, S., Cai, Z. & Skums, P. (eds.). Springer Verlag, p. 299-313 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10847 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Multi-SpaM: A maximum-likelihood approach to phylogeny reconstruction using multiple spaced-word matches and quartet trees

      Dencker, T., Leimeister, C. A., Gerth, M., Bleidorn, C., Snir, S. & Morgenstern, B., 2018, Comparative Genomics - 16th International Conference, RECOMB-CG 2018, Proceedings. Ouangraoua, A. & Blanchette, M. (eds.). Springer Verlag, p. 227-241 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11183 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2017

      Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes

      Duong, D., Gai, L., Snir, S., Kang, E. Y., Han, B., Sul, J. H. & Eskin, E., 2017, Proceedings of ISMB 2017.

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Reconstruction of Real and Simulated Phylogenies Based on Quartet Plurality Inference

      Avni, E. & Snir, S., 2017, ISBRA 2017. (Lecture Notes in Bioinformatics; vol. 10330).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2014

      Gene-gene interactions detection using a two-stage model

      Wang, Z., Sul, J. H., Snir, S., Lozano, J. A. & Eskin, E., 2014, Research in Computational Molecular Biology - 18th Annual International Conference, RECOMB 2014, Proceedings. Springer Verlag, p. 340-355 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8394 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • On the compatibility of quartet trees

      Alon, N., Snir, S. & Yuster, R., 2014, Proceedings of the 25th Annual ACM-SIAM Symposium on Discrete Algorithms, SODA 2014. Association for Computing Machinery, p. 535-545 11 p. (Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Pacemaker partition identification

      Snir, S., 2014, Algorithms in Bioinformatics - 14th International Workshop, WABI 2014, Proceedings. Springer Verlag, p. 281-295 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 8701 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2012

      Recovering the tree-like trend of evolution despite extensive lateral genetic transfer: A probabilistic analysis

      Roch, S. & Snir, S., 2012, Research in Computational Molecular Biology - 16th Annual International Conference, RECOMB 2012, Proceedings. p. 224-238 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 7262 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      Open Access
    • 2011

      A linear time approximation scheme for maximum quartet consistency on sparse sampled inputs

      Snir, S. & Yuster, R., 2011, Approximation, Randomization, and Combinatorial Optimization: Algorithms and Techniques - 14th International Workshop, APPROX 2011 and 15th International Workshop, RANDOM 2011, Proceedings. p. 339-350 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6845 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2010

      Reconstructing approximate phylogenetic trees from quartet samples

      Snir, S. & Yuster, R., 2010, Proceedings of the 21st Annual ACM-SIAM Symposium on Discrete Algorithms. Association for Computing Machinery (ACM), p. 1035-1044 10 p. (Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

      Open Access
    • 2008

      Fast and reliable reconstruction of phylogenetic trees with very short edges extended abstract

      Gronau, I., Moran, S. & Snir, S., 2008, Proceedings of the 19th Annual ACM-SIAM Symposium on Discrete Algorithms. Association for Computing Machinery, p. 379-388 10 p. (Proceedings of the Annual ACM-SIAM Symposium on Discrete Algorithms).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Novel phylogenetic network inference by combining maximum likelihood and hidden Markov Models

      Snir, S. & Tuller, T., 2008, Algorithms in Bioinformatics - 8th International Workshop, WABI 2008, Proceedings. p. 354-368 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5251 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2007

      A new linear-time heuristic algorithm for computing the parsimony score of phylogenetic networks: Theoretical bounds and empirical performance

      Jin, G., Nakhleh, L., Snir, S. & Tuller, T., 2007, Bioinformatics Research and Applications - Third International Symposium, ISBRA 2007, Proceedings. Springer Verlag, p. 61-72 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4463 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Connected coloring completion for general graphs: Algorithms and complexity

      Chor, B., Fellows, M., Ragan, M. A., Razgon, I., Rosamond, F. & Snir, S., 2007, Computing and Combinatorics - 13th Annual International Conference, COCOON 2007, Proceedings. Springer Verlag, p. 75-85 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4598 LNCS).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2006

      Phylogenetic profiling of insertions and deletions in vertebrate genomes

      Snir, S. & Pachter, L., 2006, Research in Computational Molecular Biology - 10th Annual International Conference, RECOMB 2006, Proceedings. p. 265-280 16 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3909 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2005

      The homology kernel: A biologically motivated sequence embedding into euclidean space

      Eskin, E. & Snir, S., 2005, Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05. IEEE Computer Society, 1594915. (Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB '05; vol. 2005).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • Using semi-definite programming to enhance supertree resolvability

      Moran, S., Rao, S. & Snir, S., 2005, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). p. 89-103 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3692 LNBI).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

    • 2002

      Restricting SBH ambiguity via restriction enzymes

      Skiena, S. & Snir, S., 2002, Algorithms in Bioinformatics - 2nd International Workshop,WABI 2002, Proceedings. Guigo, R. & Gusfield, D. (eds.). Springer Verlag, p. 404-417 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2452).

      Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review